Leaf Rust
Genomic projects for wheat leaf rust (Puccinia triticina) have focused on a number of areas to improve our understanding of: (i) how this pathogen has evolved over time (ii) how different races are distributed across the globe and (iii) specific genes that the pathogen uses to enable successful infection. Below is a list of all genomic-based data that is currently available:
Reference genome assemblies available
Isolate name | Country | Year | Sequencing technology | Accession(s) | Publication |
---|---|---|---|---|---|
60-L-2 | Australia | 1978 | Illumina | SRR4254457 | Wu et al., 2017 |
64-L-3 | Australia | 1976 | Illumina | SRR4254458 | Wu et al., 2017 |
66-L-3 | Australia | 1974 | Illumina | SRR4254456 | Wu et al., 2017 |
89-L-1 | Australia | 1989 | Illumina | SRR4254450 | Wu et al., 2017 |
630550 | Australia | 1974 | Illumina | SRR4254459 | Wu et al., 2017 |
630846 | Australia | 1980 | Illumina | SRR4254442 | Wu et al., 2017 |
670028 | New Zealand | 1990 | Illumina | SRR4254454 | Wu et al., 2017 |
700201 | Australia, QLD | 1974 | Illumina | SRR4254444 | Wu et al., 2017 |
700575 | New Zealand | 1974 | Illumina | SRR4254447 | Wu et al., 2017 |
730003 | Australia | 1974 | Illumina | SRR4254455 | Wu et al., 2017 |
740408 | Australia, QLD | 1975 | Illumina | SRR4254445 | Wu et al., 2017 |
740606 | Australia | 1975 | Illumina | SRR4254446 | Wu et al., 2017 |
750299 | Australia, QLD | 1976 | Illumina | SRR4254443 | Wu et al., 2017 |
760285 | Australia, QLD | 1976 | Illumina | SRR4254441 | Wu et al., 2017 |
790197 | Australia | 1979 | Illumina | SRR4254453 | Wu et al., 2017 |
890155 | Australia | 1990 | Illumina | SRR4254451 | Wu et al., 2017 |
900084 | Australia | 1991 | Illumina | SRR4254449 | Wu et al., 2017 |
900273 | Australia | 1991 | Illumina | SRR4254452 | Wu et al., 2017 |
BBBD | North America | 1954 | 454, Sanger, Illumina | ADAS00000000 | Cuomo et al. 2017; Ordonez and Kolmer 2009 |
BBBD_04NE346_2 | USA | 2004 | Illumina | SRR630042 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
BBBD_Race1_1 | USA | 1954 | Illumina | SRR403996 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
BBBQB_CZ20_09 | Czech-Slovakia | 2009 | Illumina | SRR630065 | Fellers et al., 2021; Kolmer et al 2011 |
BCL75 | Australia | 1974 | Illumina | SRR4254460 | Wu et al., 2017 |
DGGQ_09GBR10_1 | Great Britain | 2009 | Illumina | SRR630050 | Fellers et al., 2021; Kolmer et al 2013 |
DHJJ_09GB14.1 | Great Britain | 2009 | Illumina | SRR630057 | Fellers et al., 2021; Kolmer et al 2013 |
DURUM_09AZ103A | USA | 2009 | Illumina | SRR630047 | Fellers et al., 2021; Kolmer et al 2011 |
DURUM_CA_1.2 | USA | 2006 | Illumina | SRR630070 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
DURUM_MX_14_3 | Mexico | 2004 | Illumina | SRR630061 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
FBMTK_04GA88_03 | USA | 1988 | Illumina | SRR630059 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
FBPSQ_FR56 | France | 2004 | Illumina | SRR630046 | Fellers et al., 2021; Kolmer et al 2013 |
FCBQB_CHL08_5_3 | Chile | 2011 | Illumina | SRR630062 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
FCPNS_CZ18_09 | Czech-Slovakia | 2009 | Illumina | SRR630054 | Fellers et al., 2021; Kolmer et al 2013 |
FCPQQ_95SK2_2 | Czech-Slovakia | 1995 | Illumina | SRR630056 | Fellers et al., 2021; Kolmer et al 2013 |
FCPSQ_09TUR11_1 | Turkey | 2009 | Illumina | SRR630049 | Fellers et al., 2021; Kolmer et al 2013 |
FCPSQ_09TUR23_1 | Turkey | 2009 | Illumina | SRR11479800 | Fellers et al., 2021; Kolmer et al 2013 |
FCPSS_F95 | France | 2003 | Illumina | SRR630066 | Fellers et al., 2021; Kolmer et al 2013 |
FHMQQ_CZ10_09 | Czech-Slovakia | 2009 | Illumina | SRR630055 | Fellers et al., 2021; Kolmer et al 2013 |
FLLLK_82TX2 | USA | 1982 | Illumina | SRR630068 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
KBBJK_84MN526_2 | USA | 1984 | Illumina | SRR630060 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
KCMQ_09TUR19_2_09 | Turkey | 2009 | Illumina | SRR630067 | Fellers et al., 2021; Kolmer et al 2011 |
KFBJG_97CA64_1 | USA | 1997 | Illumina | SRR11074673 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
LBBKK_99NC | USA | 1999 | Illumina | SRR630044 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MBBJT_RACE5 | USA | Illumina | SRR630071 | Fellers et al., 2021; Ordonez and Kolmer 2009 | |
MBDGK_99NC23_1B | USA | 1999 | Illumina | SRR630052 | Fellers et al., 2021 |
MBDS_06CAN32_1 | USA | 2006 | Illumina | SRR630053 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MBDSD_11US129_2 | USA | 2011 | Illumina | SRR11071608 | Fellers et al., 2021; Kolmer et al 2013 |
MBDSD_11US144_2 | USA | 2011 | Illumina | SRR11071607 | Fellers et al., 2021; Kolmer et al 2013 |
MBGDK_99NC23_1B | USA | 1999 | Illumina | SRR11479799 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MBPSB_11US159_1 | USA | 2011 | Illumina | SRR11071596 | Fellers et al., 2021; Kolmer et al 2013 |
MBRL_KSUSDA1 | USA | Illumina | SRR630048 | Fellers et al., 2021 | |
MBTNB_11US148_2 | USA | 2011 | Illumina | SRR11071592 | Fellers et al., 2021; Kolmer et al 2013 |
MBTNB_11US213_1 | USA | 2011 | Illumina | SRR11071591 | Fellers et al., 2021; Kolmer et al 2013 |
MCDS_03CA360_2 | USA | 2003 | Illumina | SRR630069 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MCDSB_11US185_2 | USA | 2011 | Illumina | SRR11071590 | Fellers et al., 2021; Kolmer et al 2013 |
MCDSD_11US034_2 | USA | 2011 | Illumina | SRR11071589 | Fellers et al., 2021; Kolmer et al 2013 |
MCJSS_04ND447 | USA | 2004 | Illumina | SRR630045 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MCPSB_11US230_1 | USA | 2011 | Illumina | SRR11071588 | Fellers et al., 2021; Kolmer et al 2013 |
MCPSS_04ND477 | USA | 2004 | Illumina | SRR630063 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MCRK_03MN267 | USA | 2003 | Illumina | SRR630043 | Fellers et al., 2021 |
MCTNB_11US204_3 | USA | 2011 | Illumina | SRR11071587 | Fellers et al., 2021; Kolmer et al 2013 |
MCTNB_11US205_2 | USA | 2011 | Illumina | SRR11071586 | Fellers et al., 2021; Kolmer et al 2013 |
MCTSB_11US019_2 | USA | 2011 | Illumina | SRR11080361 | Fellers et al., 2021; Kolmer et al 2013 |
MCTSB_11US116_1 | USA | 2011 | Illumina | SRR11479798 | Fellers et al., 2021; Kolmer et al 2013 |
MDDSB_11US040_3 | USA | 2011 | Illumina | SRR11071606 | Fellers et al., 2021; Kolmer et al 2013 |
MDFSB_11US187_2 | USA | 2011 | Illumina | SRR11074672 | Fellers et al., 2021; Kolmer et al 2013 |
MDPSB_11US122_1 | USA | 2011 | Illumina | SRR11071605 | Fellers et al., 2021; Kolmer et al 2013 |
MFNSB_11US014_2 | USA | 2011 | Illumina | SRR11080360 | Fellers et al., 2021; Kolmer et al 2013 |
MFNSB_11US029_3 | USA | 2011 | Illumina | SRR11479796 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MFNSB_11US039_2 | USA | 2011 | Illumina | SRR11080359 | Fellers et al., 2021; Kolmer et al 2013 |
MFNSB_11US074_2 | USA | 2011 | Illumina | SRR11080358 | Fellers et al., 2021; Kolmer et al 2013 |
MFNSB_11US220_3 | USA | 2011 | Illumina | SRR11074665 | Fellers et al., 2021; Kolmer et al 2013 |
MFPS_06MN268 | USA | 2006 | Illumina | SRR630058 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MHDS_03OH237 | USA | 2003 | Illumina | SRR630064 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MJBJ_97NE406 | USA | 2006 | Illumina | SRR630041 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MLDS_06MN384 | USA | 2006 | Illumina | SRR630072 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
MLDSD_11US025_3 | USA | 2011 | Illumina | SRR11074664 | Fellers et al., 2021; Kolmer et al 2013 |
MLDSS_10MN1_2 | USA | 2010 | Illumina | SRR630051 | Fellers et al., 2021; Kolmer et al 2012 |
MMDSD_11US075_1 | USA | 2011 | Illumina | SRR11080355 | Fellers et al., 2021; Kolmer et al 2013 |
NBBGT_11US182_1 | USA | 2011 | Illumina | SRR11479797 | Fellers et al., 2021; Kolmer et al 2013 |
NBBR_98WA1 | USA | 1998 | Illumina | SRR11080356 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
NBBRG_11US203_2B | USA | 2011 | Illumina | SRR11071604 | Fellers et al., 2021; Kolmer et al 2013 |
NBBSG_11US179_2A | USA | 2011 | Illumina | SRR11074663 | Fellers et al., 2021; Kolmer et al 2013 |
NBBTG_11US203_3B | USA | 2011 | Illumina | SRR11071603 | Fellers et al., 2021; Kolmer et al 2013 |
NBGKK_82MN116_1 | USA | 1982 | Illumina | SRR11080373 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
PBDJ_84PA1 | USA | 1984 | Illumina | SRR11080357 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
PBJL_PRTUS6 | USA | Illumina | SRR11080367 | Fellers et al., 2021 | |
PBJSF_84VA | USA | 1984 | Illumina | SRR11479801 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
PBLR_91MI | USA | 1991 | Illumina | SRR11080364 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
PBMGK_87NY626_2 | USA | 1987 | Illumina | SRR11080363 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
PNMR_94LA101 | USA | 1994 | Illumina | SRR11080362 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
PRTUS1_PRTUS1 | USA | Illumina | SRR11080378 | Fellers et al., 2021 | |
Pt64 | Australia | 1990 | PacBio, Hi-C | PRJNA728188 | Wu et al., 2021 |
Pt104 | Australia | 1984 | PacBio | PRJNA607157 | Wu et al. 2020 |
Pt_ARG_9.3 | Argentina | 2004 | Illumina | SRR11070894 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ARG_12.1 | Argentina | 2004 | Illumina | SRR11070895 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ESP_4 | Spain | 2003 | Illumina | SRR11070882 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ESP_12 | Spain | 2003 | Illumina | SRR11070885 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ESP_27 | Spain | 2003 | Illumina | SRR11070884 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ESP_30 | Spain | 2003 | Illumina | SRR11070883 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ETH_4.1 | Ethiopia | 2002 | Illumina | SRR11070893 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ETH_6.1 | Ethiopia | 2002 | Illumina | SRR11070890 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ETH_11D5_1 | Ethiopia | 2011 | Illumina | SRR11070881 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ETH_11D9_3 | Ethiopia | 2011 | Illumina | SRR11070880 | Fellers et al., 2021; Kolmer and Acevedo 2016 |
Pt_ETH_16.1 | Ethiopia | 2002 | Illumina | SRR11070878 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ETH_125_2 | Ethiopia | 2012 | Illumina | SRR11070879 | Fellers et al., 2021; Kolmer and Acevedo 2016 |
Pt_ETH_4090_3 | Ethiopia | Illumina | SRR11070892 | Fellers et al., 2021; Ordonez and Kolmer 2007 | |
Pt_ETH_4114_7 | Ethiopia | Illumina | SRR11070891 | Fellers et al., 2021; Ordonez and Kolmer 2007 | |
Pt_FRA_4.3 | France | 2004 | Illumina | SRR11070889 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_FRA_5.3 | France | 2004 | Illumina | SRR11070888 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
Pt_ISR_850 | Israel | Illumina | SRR11070886 | Wu et al., 2017 | |
Pt_ISR_1508 | Israel | 2006 | Illumina | SRR11070887 | Fellers et al., 2021; Ordonez and Kolmer 2007 |
QWRI | Australia, QLD | 1990 | Illumina | SRR4254448 | Wu et al., 2017 |
Race77 | India | 1954 | 454, Sanger | PRJNA231547 | Kiran et al. 2016 |
Race106 | India | 1934 | 454, Sanger | PRJNA231548 | Kiran et al. 2016 |
SBDB_04MN364 | USA | 2004 | Illumina | SRR11080380 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
SBDGD_10MT13_1 | USA | 2010 | Illumina | SRR11080379 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
SCPBJ_ISR173B | Israel | 1998 | Illumina | SRR11080366 | Fellers et al., 2021; Kolmer et al 2011 |
TBBGJ_11US042_1 | USA | 2011 | Illumina | SRR11071602 | Fellers et al., 2021; Kolmer et al 2013 |
TBBGJ_11US136_1 | USA | 2011 | Illumina | SRR11071601 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TBDS_04TX67 | USA | 2004 | Illumina | SRR11080354 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TCBJG_11US053_3 | USA | 2011 | Illumina | SRR11071600 | Fellers et al., 2021; Kolmer et al 2013 |
TCBJK_04TX104 | USA | 2004 | Illumina | SRR11080377 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TCGJG_11US256_3 | USA | 2011 | Illumina | SRR11071595 | Fellers et al., 2021; Kolmer et al 2013 |
TCJSB_11US078_1 | USA | 2011 | Illumina | SRR11071599 | Fellers et al., 2021; Kolmer et al 2013 |
TCPSS_04KS213 | USA | 2004 | Illumina | SRR11071598 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TCRKG_11US057_1 | USA | 2011 | Illumina | SRR11071597 | Fellers et al., 2021; Kolmer et al 2013 |
TCRKG_11US116_2 | USA | 2011 | Illumina | SRR11071594 | Fellers et al., 2021; Kolmer et al 2013 |
TCTDL_03VA190 | USA | 2003 | Illumina | SRR11080368 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TCTSB_11US189_3 | USA | 2011 | Illumina | SRR11074662 | Fellers et al., 2021; Kolmer et al 2013 |
TDBG_08TX210 | USA | 2008 | Illumina | SRR11080376 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TDBJG_11US154_1 | USA | 2011 | Illumina | SRR11080375 | Fellers et al., 2021; Kolmer et al 2013 |
TDBJQ_11US026_1 | USA | 2011 | Illumina | SRR11074661 | Fellers et al., 2021; Kolmer et al 2013 |
TDBJQ_11US091_2 | USA | 2011 | Illumina | SRR11074660 | Fellers et al., 2021; Kolmer et al 2013 |
TDFSS_04TX86 | USA | 2004 | Illumina | SRR11080381 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TFBGG_11US176_2 | USA | 2011 | Illumina | SRR11074659 | Fellers et al., 2021; Kolmer et al 2013 |
TFBGQ_11US212_1 | USA | 2011 | Illumina | SRR11071593 | Fellers et al., 2021; Kolmer et al 2013 |
TFBJQ_10MN3_1_2 | USA | 2010 | Illumina | SRR11080374 | Fellers et al., 2021; Kolmer et al 2012 |
THBJ_99ND588 | USA | 1999 | Illumina | SRR11080372 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TJBGH_04OH300 | USA | 2004 | Illumina | SRR11080371 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TNBGJ_11US022_3 | USA | 2011 | Illumina | SRR11074658 | Fellers et al., 2021; Kolmer et al 2013 |
TNBGJ_11US045_2 | USA | 2011 | Illumina | SRR11080370 | Fellers et al., 2021; Kolmer et al 2013 |
TNBGJ_11US048_2 | USA | 2011 | Illumina | SRR11074671 | Fellers et al., 2021; Kolmer et al 2013 |
TNBGJ_11US130_2 | USA | 2011 | Illumina | SRR11074670 | Fellers et al., 2021; Kolmer et al 2013 |
TNBJJ_11US030_1 | USA | 2011 | Illumina | SRR11074669 | Fellers et al., 2021; Kolmer et al 2013 |
TNRJ_05TX27 | USA | 2005 | Illumina | SRR11080369 | Fellers et al., 2021; Ordonez and Kolmer 2009 |
TNRJJ_11US043_3 | USA | 2011 | Illumina | SRR11074668 | Fellers et al., 2021; Kolmer et al 2013 |
TNRJJ_11US098_2 | USA | 2011 | Illumina | SRR11074667 | Fellers et al., 2021; Kolmer et al 2013 |
TPBGJ_11US044_1 | USA | 2011 | Illumina | SRR11074666 | Fellers et al., 2021; Kolmer et al 2013 |