Leaf Rust

Leaf Rust

Genomic projects for wheat leaf rust (Puccinia triticina) have focused on a number of areas to improve our understanding of: (i) how this pathogen has evolved over time (ii) how different races are distributed across the globe and (iii) specific genes that the pathogen uses to enable successful infection. Below is a list of all genomic-based data that is currently available:

Reference genome assemblies available

Isolate nameCountryYearSequencing technologyAccession(s)Publication
60-L-2Australia1978IlluminaSRR4254457Wu et al., 2017
64-L-3Australia1976IlluminaSRR4254458Wu et al., 2017
66-L-3Australia1974IlluminaSRR4254456Wu et al., 2017
89-L-1Australia1989IlluminaSRR4254450Wu et al., 2017
630550Australia1974IlluminaSRR4254459Wu et al., 2017
630846Australia1980IlluminaSRR4254442Wu et al., 2017
670028New Zealand1990IlluminaSRR4254454Wu et al., 2017
700201Australia, QLD1974IlluminaSRR4254444Wu et al., 2017
700575New Zealand1974IlluminaSRR4254447Wu et al., 2017
730003Australia1974IlluminaSRR4254455Wu et al., 2017
740408Australia, QLD1975IlluminaSRR4254445Wu et al., 2017
740606Australia1975IlluminaSRR4254446Wu et al., 2017
750299Australia, QLD1976IlluminaSRR4254443Wu et al., 2017
760285Australia, QLD1976IlluminaSRR4254441Wu et al., 2017
790197Australia1979IlluminaSRR4254453Wu et al., 2017
890155Australia1990IlluminaSRR4254451Wu et al., 2017
900084Australia1991IlluminaSRR4254449Wu et al., 2017
900273Australia1991IlluminaSRR4254452Wu et al., 2017
BBBDNorth America1954454, Sanger, IlluminaADAS00000000 Cuomo et al. 2017; Ordonez and Kolmer 2009
BBBD_04NE346_2USA2004IlluminaSRR630042 Fellers et al., 2021; Ordonez and Kolmer 2009
BBBD_Race1_1USA1954IlluminaSRR403996Fellers et al., 2021; Ordonez and Kolmer 2009
BBBQB_CZ20_09Czech-Slovakia2009IlluminaSRR630065Fellers et al., 2021; Kolmer et al 2011
BCL75Australia1974IlluminaSRR4254460Wu et al., 2017
DGGQ_09GBR10_1Great Britain2009IlluminaSRR630050 Fellers et al., 2021; Kolmer et al 2013
DHJJ_09GB14.1Great Britain2009IlluminaSRR630057 Fellers et al., 2021; Kolmer et al 2013
DURUM_09AZ103AUSA2009IlluminaSRR630047Fellers et al., 2021; Kolmer et al 2011
DURUM_CA_1.2USA2006IlluminaSRR630070Fellers et al., 2021; Ordonez and Kolmer 2007
DURUM_MX_14_3Mexico2004IlluminaSRR630061 Fellers et al., 2021; Ordonez and Kolmer 2007
FBMTK_04GA88_03USA1988IlluminaSRR630059Fellers et al., 2021; Ordonez and Kolmer 2009
FBPSQ_FR56France2004IlluminaSRR630046 Fellers et al., 2021; Kolmer et al 2013
FCBQB_CHL08_5_3Chile2011IlluminaSRR630062Fellers et al., 2021; Ordonez and Kolmer 2007
FCPNS_CZ18_09Czech-Slovakia2009IlluminaSRR630054Fellers et al., 2021; Kolmer et al 2013
FCPQQ_95SK2_2Czech-Slovakia1995IlluminaSRR630056Fellers et al., 2021; Kolmer et al 2013
FCPSQ_09TUR11_1Turkey2009IlluminaSRR630049 Fellers et al., 2021; Kolmer et al 2013
FCPSQ_09TUR23_1Turkey2009IlluminaSRR11479800Fellers et al., 2021; Kolmer et al 2013
FCPSS_F95France2003IlluminaSRR630066Fellers et al., 2021; Kolmer et al 2013
FHMQQ_CZ10_09Czech-Slovakia2009IlluminaSRR630055Fellers et al., 2021; Kolmer et al 2013
FLLLK_82TX2USA1982IlluminaSRR630068Fellers et al., 2021; Ordonez and Kolmer 2009
KBBJK_84MN526_2USA1984IlluminaSRR630060Fellers et al., 2021; Ordonez and Kolmer 2009
KCMQ_09TUR19_2_09Turkey2009IlluminaSRR630067Fellers et al., 2021; Kolmer et al 2011
KFBJG_97CA64_1USA1997IlluminaSRR11074673Fellers et al., 2021; Ordonez and Kolmer 2009
LBBKK_99NCUSA1999IlluminaSRR630044Fellers et al., 2021; Ordonez and Kolmer 2009
MBBJT_RACE5USAIlluminaSRR630071Fellers et al., 2021; Ordonez and Kolmer 2009
MBDGK_99NC23_1BUSA1999IlluminaSRR630052Fellers et al., 2021
MBDS_06CAN32_1USA2006IlluminaSRR630053Fellers et al., 2021; Ordonez and Kolmer 2009
MBDSD_11US129_2USA2011IlluminaSRR11071608Fellers et al., 2021; Kolmer et al 2013
MBDSD_11US144_2USA2011IlluminaSRR11071607Fellers et al., 2021; Kolmer et al 2013
MBGDK_99NC23_1BUSA1999IlluminaSRR11479799Fellers et al., 2021; Ordonez and Kolmer 2009
MBPSB_11US159_1USA2011IlluminaSRR11071596Fellers et al., 2021; Kolmer et al 2013
MBRL_KSUSDA1USAIlluminaSRR630048 Fellers et al., 2021
MBTNB_11US148_2USA2011IlluminaSRR11071592Fellers et al., 2021; Kolmer et al 2013
MBTNB_11US213_1USA2011IlluminaSRR11071591Fellers et al., 2021; Kolmer et al 2013
MCDS_03CA360_2USA2003IlluminaSRR630069Fellers et al., 2021; Ordonez and Kolmer 2009
MCDSB_11US185_2USA2011IlluminaSRR11071590Fellers et al., 2021; Kolmer et al 2013
MCDSD_11US034_2USA2011IlluminaSRR11071589Fellers et al., 2021; Kolmer et al 2013
MCJSS_04ND447USA2004IlluminaSRR630045 Fellers et al., 2021; Ordonez and Kolmer 2009
MCPSB_11US230_1USA2011IlluminaSRR11071588Fellers et al., 2021; Kolmer et al 2013
MCPSS_04ND477USA2004IlluminaSRR630063Fellers et al., 2021; Ordonez and Kolmer 2009
MCRK_03MN267USA2003IlluminaSRR630043Fellers et al., 2021
MCTNB_11US204_3USA2011IlluminaSRR11071587Fellers et al., 2021; Kolmer et al 2013
MCTNB_11US205_2USA2011IlluminaSRR11071586Fellers et al., 2021; Kolmer et al 2013
MCTSB_11US019_2USA2011IlluminaSRR11080361Fellers et al., 2021; Kolmer et al 2013
MCTSB_11US116_1USA2011IlluminaSRR11479798Fellers et al., 2021; Kolmer et al 2013
MDDSB_11US040_3USA2011IlluminaSRR11071606Fellers et al., 2021; Kolmer et al 2013
MDFSB_11US187_2USA2011IlluminaSRR11074672Fellers et al., 2021; Kolmer et al 2013
MDPSB_11US122_1USA2011IlluminaSRR11071605Fellers et al., 2021; Kolmer et al 2013
MFNSB_11US014_2USA2011IlluminaSRR11080360Fellers et al., 2021; Kolmer et al 2013
MFNSB_11US029_3USA2011IlluminaSRR11479796Fellers et al., 2021; Ordonez and Kolmer 2009
MFNSB_11US039_2USA2011IlluminaSRR11080359Fellers et al., 2021; Kolmer et al 2013
MFNSB_11US074_2USA2011IlluminaSRR11080358Fellers et al., 2021; Kolmer et al 2013
MFNSB_11US220_3USA2011IlluminaSRR11074665Fellers et al., 2021; Kolmer et al 2013
MFPS_06MN268USA2006IlluminaSRR630058Fellers et al., 2021; Ordonez and Kolmer 2009
MHDS_03OH237USA2003IlluminaSRR630064Fellers et al., 2021; Ordonez and Kolmer 2009
MJBJ_97NE406USA2006IlluminaSRR630041Fellers et al., 2021; Ordonez and Kolmer 2009
MLDS_06MN384USA2006IlluminaSRR630072Fellers et al., 2021; Ordonez and Kolmer 2009
MLDSD_11US025_3USA2011IlluminaSRR11074664Fellers et al., 2021; Kolmer et al 2013
MLDSS_10MN1_2USA2010IlluminaSRR630051Fellers et al., 2021; Kolmer et al 2012
MMDSD_11US075_1USA2011IlluminaSRR11080355Fellers et al., 2021; Kolmer et al 2013
NBBGT_11US182_1USA2011IlluminaSRR11479797Fellers et al., 2021; Kolmer et al 2013
NBBR_98WA1USA1998IlluminaSRR11080356Fellers et al., 2021; Ordonez and Kolmer 2009
NBBRG_11US203_2BUSA2011IlluminaSRR11071604Fellers et al., 2021; Kolmer et al 2013
NBBSG_11US179_2AUSA2011IlluminaSRR11074663Fellers et al., 2021; Kolmer et al 2013
NBBTG_11US203_3BUSA2011IlluminaSRR11071603Fellers et al., 2021; Kolmer et al 2013
NBGKK_82MN116_1USA1982IlluminaSRR11080373Fellers et al., 2021; Ordonez and Kolmer 2009
PBDJ_84PA1USA1984IlluminaSRR11080357Fellers et al., 2021; Ordonez and Kolmer 2009
PBJL_PRTUS6USAIlluminaSRR11080367Fellers et al., 2021
PBJSF_84VAUSA1984IlluminaSRR11479801Fellers et al., 2021; Ordonez and Kolmer 2009
PBLR_91MIUSA1991IlluminaSRR11080364Fellers et al., 2021; Ordonez and Kolmer 2009
PBMGK_87NY626_2USA1987IlluminaSRR11080363Fellers et al., 2021; Ordonez and Kolmer 2009
PNMR_94LA101USA1994IlluminaSRR11080362Fellers et al., 2021; Ordonez and Kolmer 2009
PRTUS1_PRTUS1USAIlluminaSRR11080378Fellers et al., 2021
Pt64Australia1990PacBio, Hi-CPRJNA728188Wu et al., 2021
Pt104Australia1984PacBioPRJNA607157Wu et al. 2020
Pt_ARG_9.3Argentina2004IlluminaSRR11070894Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ARG_12.1Argentina2004IlluminaSRR11070895Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ESP_4Spain2003IlluminaSRR11070882Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ESP_12Spain2003IlluminaSRR11070885Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ESP_27Spain2003IlluminaSRR11070884Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ESP_30Spain2003IlluminaSRR11070883Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ETH_4.1Ethiopia2002IlluminaSRR11070893Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ETH_6.1Ethiopia2002IlluminaSRR11070890Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ETH_11D5_1Ethiopia2011IlluminaSRR11070881Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ETH_11D9_3Ethiopia2011IlluminaSRR11070880Fellers et al., 2021; Kolmer and Acevedo 2016
Pt_ETH_16.1Ethiopia2002IlluminaSRR11070878Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ETH_125_2Ethiopia2012IlluminaSRR11070879Fellers et al., 2021; Kolmer and Acevedo 2016
Pt_ETH_4090_3EthiopiaIlluminaSRR11070892Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ETH_4114_7EthiopiaIlluminaSRR11070891Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_FRA_4.3France2004IlluminaSRR11070889Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_FRA_5.3France2004IlluminaSRR11070888Fellers et al., 2021; Ordonez and Kolmer 2007
Pt_ISR_850IsraelIlluminaSRR11070886Wu et al., 2017
Pt_ISR_1508Israel2006IlluminaSRR11070887Fellers et al., 2021; Ordonez and Kolmer 2007
QWRIAustralia, QLD1990IlluminaSRR4254448Wu et al., 2017
Race77India1954454, SangerPRJNA231547Kiran et al. 2016
Race106India1934454, SangerPRJNA231548Kiran et al. 2016
SBDB_04MN364USA2004IlluminaSRR11080380Fellers et al., 2021; Ordonez and Kolmer 2009
SBDGD_10MT13_1USA2010IlluminaSRR11080379Fellers et al., 2021; Ordonez and Kolmer 2009
SCPBJ_ISR173BIsrael1998IlluminaSRR11080366Fellers et al., 2021; Kolmer et al 2011
TBBGJ_11US042_1USA2011IlluminaSRR11071602Fellers et al., 2021; Kolmer et al 2013
TBBGJ_11US136_1USA2011IlluminaSRR11071601Fellers et al., 2021; Ordonez and Kolmer 2009
TBDS_04TX67USA2004IlluminaSRR11080354Fellers et al., 2021; Ordonez and Kolmer 2009
TCBJG_11US053_3USA2011IlluminaSRR11071600Fellers et al., 2021; Kolmer et al 2013
TCBJK_04TX104USA2004IlluminaSRR11080377Fellers et al., 2021; Ordonez and Kolmer 2009
TCGJG_11US256_3USA2011IlluminaSRR11071595Fellers et al., 2021; Kolmer et al 2013
TCJSB_11US078_1USA2011IlluminaSRR11071599Fellers et al., 2021; Kolmer et al 2013
TCPSS_04KS213USA2004IlluminaSRR11071598Fellers et al., 2021; Ordonez and Kolmer 2009
TCRKG_11US057_1USA2011IlluminaSRR11071597Fellers et al., 2021; Kolmer et al 2013
TCRKG_11US116_2USA2011IlluminaSRR11071594Fellers et al., 2021; Kolmer et al 2013
TCTDL_03VA190USA2003IlluminaSRR11080368Fellers et al., 2021; Ordonez and Kolmer 2009
TCTSB_11US189_3USA2011IlluminaSRR11074662Fellers et al., 2021; Kolmer et al 2013
TDBG_08TX210USA2008IlluminaSRR11080376Fellers et al., 2021; Ordonez and Kolmer 2009
TDBJG_11US154_1USA2011IlluminaSRR11080375Fellers et al., 2021; Kolmer et al 2013
TDBJQ_11US026_1USA2011IlluminaSRR11074661Fellers et al., 2021; Kolmer et al 2013
TDBJQ_11US091_2USA2011IlluminaSRR11074660Fellers et al., 2021; Kolmer et al 2013
TDFSS_04TX86USA2004IlluminaSRR11080381Fellers et al., 2021; Ordonez and Kolmer 2009
TFBGG_11US176_2USA2011IlluminaSRR11074659Fellers et al., 2021; Kolmer et al 2013
TFBGQ_11US212_1USA2011IlluminaSRR11071593Fellers et al., 2021; Kolmer et al 2013
TFBJQ_10MN3_1_2USA2010IlluminaSRR11080374Fellers et al., 2021; Kolmer et al 2012
THBJ_99ND588USA1999IlluminaSRR11080372Fellers et al., 2021; Ordonez and Kolmer 2009
TJBGH_04OH300USA2004IlluminaSRR11080371Fellers et al., 2021; Ordonez and Kolmer 2009
TNBGJ_11US022_3USA2011IlluminaSRR11074658Fellers et al., 2021; Kolmer et al 2013
TNBGJ_11US045_2USA2011IlluminaSRR11080370Fellers et al., 2021; Kolmer et al 2013
TNBGJ_11US048_2USA2011IlluminaSRR11074671Fellers et al., 2021; Kolmer et al 2013
TNBGJ_11US130_2USA2011IlluminaSRR11074670Fellers et al., 2021; Kolmer et al 2013
TNBJJ_11US030_1USA2011IlluminaSRR11074669Fellers et al., 2021; Kolmer et al 2013
TNRJ_05TX27USA2005IlluminaSRR11080369Fellers et al., 2021; Ordonez and Kolmer 2009
TNRJJ_11US043_3USA2011IlluminaSRR11074668Fellers et al., 2021; Kolmer et al 2013
TNRJJ_11US098_2USA2011IlluminaSRR11074667Fellers et al., 2021; Kolmer et al 2013
TPBGJ_11US044_1USA2011IlluminaSRR11074666Fellers et al., 2021; Kolmer et al 2013